BioSeqAnalyzer is a bioinformatics software tool for analyzing DNA and protein sequences.
Its Windows interface makes sequence analysis extremely easy.

BioSeqAnalyzer, registered version, supports the following
operations:

Alignment Scoring.
Linear global alignment.
Affine global alignment.
Local alignment.
Multiple alignment.
Hidden Markov Models Profile creation.
Aligning to Hidden Markov Models Profiles.
Composition-based classification.
Profile-based classification.

All functions can be performed on both DNA and protein sequences.


BioSeqAnalyzer brings to sequence analysis the following GUI features:

Enter sequences either from the keyboard or from FASTA files.
Select a FASTA file from a list of previously-used files.
Select a sequence from within a multi-sequence FASTA file using a simple listbox.
Select substitution score matrix with a single click.
View alignments in either wide, or wrap-around format.
View or hide Dynamic Programming matrices.
Create and save HMM profiles.
Align sequences to a previous-saved HMM profiles.
Much more.